From Wikipedia ...

Coffea arabica, also known as the Arabian coffee, "coffee shrub of Arabia", "mountain coffee", or "arabica coffee", is a species of Coffea. It is believed to be the first species of coffee to be cultivated, and is the dominant cultivar, representing some 60% of global production. Coffee produced from the less acidic, more bitter, and more highly caffeinated robusta bean (C. canephora) makes up the preponderance of the balance.

Data

We used coffea_canephora.gff3 and pseudomolecules.fa from the Coffee Genome Hub as the reference genome.The Isoseq data downloaded from NCBI were under project ERP021255. We used TAPIS pipeline to process these raw data.

Summary

From Iso-Seq data, we found 35,152 transcripts, 904 novel genes and 36,807 Alternative Splicing events.

Reference

• https://en.wikipedia.org/wiki/Coffea_arabica
• http://coffee-genome.org/download